| Package | Description |
|---|---|
| net.sf.jfasta |
This package contains all public interfaces of this component.
|
| net.sf.jfasta.impl |
This package contains all classes of this component.
|
| Modifier and Type | Method and Description |
|---|---|
FASTAElement |
FASTAFile.getElementByHeader(String header)
Retrieves
FASTAElement with given header string, if
there is such an element. |
FASTAElement |
FASTAFile.getLargestElement()
Retrieves Element with the longest sequence.
|
| Modifier and Type | Class and Description |
|---|---|
class |
FASTAElementImpl
TODO description
|
| Modifier and Type | Field and Description |
|---|---|
protected Collection<FASTAElement> |
FASTAFileImpl.elements |
| Modifier and Type | Method and Description |
|---|---|
protected FASTAElement |
FASTAElementIterator.doRead() |
FASTAElement |
FASTAFileImpl.getElementByHeader(String header) |
FASTAElement |
FASTAFileImpl.getLargestElement() |
| Modifier and Type | Method and Description |
|---|---|
Iterator<FASTAElement> |
FASTAFileImpl.iterator() |
| Modifier and Type | Method and Description |
|---|---|
boolean |
FASTAFileImpl.add(FASTAElement e) |
void |
FASTAFileWriter.write(FASTAElement e)
Writes a
FASTAElement. |
| Modifier and Type | Method and Description |
|---|---|
boolean |
FASTAFileImpl.addAll(Collection<? extends FASTAElement> c) |
| Constructor and Description |
|---|
FASTAFileImpl(FASTAElement element) |
| Constructor and Description |
|---|
FASTAFileImpl(Collection<? extends FASTAElement> elements) |
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