net.sf.jfasta.impl

Class FASTAElementIterator

java.lang.Object

net.sf.kerner.utils.io.buffered.AbstractBufferedReader

net.sf.kerner.utils.io.buffered.AbstractIOIterator<FASTAElement>

net.sf.jfasta.impl.FASTAElementIterator

All Implemented Interfaces:

net.sf.kerner.utils.io.buffered.GeneralIOIterator, net.sf.kerner.utils.io.buffered.IOIterator<FASTAElement>

public class FASTAElementIterator
extends net.sf.kerner.utils.io.buffered.AbstractIOIterator<FASTAElement>

TODO description

Example:

 TODO example
 

last reviewed: 2013-04-29

Version:

2013-04-29

Author:

Alexander Kerner

Field Summary

Fields

Modifier and Type	Field and Description
protected char[]	alphabet

Fields inherited from class net.sf.kerner.utils.io.buffered.AbstractIOIterator

needToPeek, peek

Fields inherited from class net.sf.kerner.utils.io.buffered.AbstractBufferedReader

reader

Constructor Summary

Constructors

Constructor and Description
FASTAElementIterator(BufferedReader reader)
FASTAElementIterator(BufferedReader reader, char[] alphabet)
FASTAElementIterator(File file)
FASTAElementIterator(File file, char[] alphabet)
FASTAElementIterator(InputStream stream)
FASTAElementIterator(InputStream stream, char[] alphabet)
FASTAElementIterator(Reader reader)
FASTAElementIterator(Reader reader, char[] alphabet)

Method Summary

Methods

Modifier and Type	Method and Description
protected FASTAElement	doRead()

Methods inherited from class net.sf.kerner.utils.io.buffered.AbstractIOIterator

hasNext, next

Methods inherited from class net.sf.kerner.utils.io.buffered.AbstractBufferedReader

close

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface net.sf.kerner.utils.io.buffered.GeneralIOIterator

close

Field Detail

alphabet

protected final char[] alphabet

Constructor Detail

FASTAElementIterator

public FASTAElementIterator(BufferedReader reader)
                     throws IOException

Throws:

IOException

FASTAElementIterator

public FASTAElementIterator(BufferedReader reader,
                    char[] alphabet)
                     throws IOException

Throws:

IOException

FASTAElementIterator

public FASTAElementIterator(File file)
                     throws IOException

Throws:

IOException

FASTAElementIterator

public FASTAElementIterator(File file,
                    char[] alphabet)
                     throws IOException

Throws:

IOException

FASTAElementIterator

public FASTAElementIterator(InputStream stream)
                     throws IOException

Throws:

IOException

FASTAElementIterator

public FASTAElementIterator(InputStream stream,
                    char[] alphabet)
                     throws IOException

Throws:

IOException

FASTAElementIterator

public FASTAElementIterator(Reader reader)
                     throws IOException

Throws:

IOException

FASTAElementIterator

public FASTAElementIterator(Reader reader,
                    char[] alphabet)
                     throws IOException

Throws:

IOException

Method Detail

doRead

protected FASTAElement doRead()
                       throws IOException

Specified by:

doRead in class net.sf.kerner.utils.io.buffered.AbstractIOIterator<FASTAElement>

Throws:

IOException