net.sf.jfasta.impl

Class HeaderDialectUniprot

java.lang.Object

net.sf.jfasta.impl.HeaderDialectUniprot

All Implemented Interfaces:

HeaderDialect

public class HeaderDialectUniprot
extends Object
implements HeaderDialect

Field Summary

Fields

Modifier and Type	Field and Description
static String	REGEX_ACC_NAMES_ONLY
static String	REGEX_ACC_NAMES_OS_GN
static String	REGEX_ACC_NAMES_OS_ONLY
static String	REGEX_ACC_ONLY
static String	REGEX_GN
static String	REGEX_OS_GN
static String	REGEX_OS_ONLY

Constructor Summary

Constructors

Constructor and Description
HeaderDialectUniprot()
HeaderDialectUniprot(String header)

Method Summary

Methods

Modifier and Type	Method and Description
String	getAccessions()
String	getGeneName()
String	getHeaderString()
String	getSpeciesName()
void	setHeaderString(String headerString)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

REGEX_OS_ONLY

public static final String REGEX_OS_ONLY

See Also:

Constant Field Values

REGEX_OS_GN

public static final String REGEX_OS_GN

See Also:

Constant Field Values

REGEX_ACC_ONLY

public static final String REGEX_ACC_ONLY

See Also:

Constant Field Values

REGEX_ACC_NAMES_OS_GN

public static final String REGEX_ACC_NAMES_OS_GN

See Also:

Constant Field Values

REGEX_ACC_NAMES_OS_ONLY

public static final String REGEX_ACC_NAMES_OS_ONLY

See Also:

Constant Field Values

REGEX_ACC_NAMES_ONLY

public static final String REGEX_ACC_NAMES_ONLY

See Also:

Constant Field Values

REGEX_GN

public static final String REGEX_GN

See Also:

Constant Field Values

Constructor Detail

HeaderDialectUniprot

public HeaderDialectUniprot()

HeaderDialectUniprot

public HeaderDialectUniprot(String header)

Method Detail

getAccessions

public String getAccessions()

getGeneName

public String getGeneName()

getHeaderString

public String getHeaderString()

getSpeciesName

public String getSpeciesName()

setHeaderString

public void setHeaderString(String headerString)